.. _introduction:

Introduction
============

The following notebooks introduce ``NiSpace`` step by step, from the basic concept to advanced analysis techniques.
They are designed to be read in order, but each notebook can also be used as a standalone reference.

The notebooks are available as downloadable Jupyter notebooks (links at the top of each page).

.. toctree::
   :maxdepth: 1

   nb_introduction/intro01_spatial_colocalizations.ipynb
   nb_introduction/intro02_nispace_intro.ipynb
   nb_introduction/intro03_fetching_datasets.ipynb
   nb_introduction/intro04_imaging_phenotypes.ipynb
   nb_introduction/intro05_null_models.ipynb
   nb_introduction/intro06_multiple_comparisons.ipynb
   nb_introduction/intro07_visualization.ipynb
   nb_introduction/intro08_brainplot.ipynb
   nb_introduction/intro09_workflows.ipynb
   nb_introduction/intro10_xsea.ipynb
   nb_introduction/intro11_advanced.ipynb