Citation

There is currently no dedicated toolbox paper for NiSpace. Please cite at least the following when you use our tools in your work:

  • NiSpace Zenodo DOI: [1]

  • JuSpace toolbox paper: [2]

  • neuromaps toolbox paper: [3]

  • Application papers in the context of which NiSpace’s core methods were developed: [4]; [5]; [6]; [7]

  • If you use the implemented null map functions:

    • "moran": [8] (original method); [9] (BrainSpace implementation)

    • "burt2020": [10]; implemented via brainsmash

    • "burt2018": [11]

    • "spin" / "cornblath": [12]

    • "baum": [13]

    • "alexander_bloch": [14]

    • "vasa": [15]

    • "hungarian": [16] (assignment algorithm); popularized for spin tests by [15]

  • If you use MNI space transform functionality (mni_to_mni):

    • EasyReg: [17]

    • SynthMorph: [18]

    • SynthSeg: [19]

  • If you use combat-harmonization functionality: [20]; [21]

  • When fetching included reference datasets, NiSpace will automatically print information on references we ask you to cite

Furthermore, the preceding tools, JuSpyce and ABAnnotate, were used in the following works:

  • JuSpyce: [5]; [6] (as above)

  • JuSpyce/ABAnnotate: [4] (as above)

  • ABAnnotate: [22]

Lastly, NiSpace strongly depends on several foundational Python packages, among them:

  • numpy: [23]

  • pandas: [24]

  • scipy: [25]

  • statsmodels: [26]

  • nibabel: [27]

  • nilearn and scikit-learn: [28]

  • matplotlib: [29]

  • seaborn: [30]

Full bibliographic details for all references are listed on the References page.