Parcellations

Important

All parcellations are made available through their original publications. When using any of them in your work, you must cite the original source listed under each entry below.

NiSpace ships with the following built-in parcellations. Fetch them via nispace.datasets.fetch_parcellation():

from nispace.datasets import fetch_parcellation
parc = fetch_parcellation("Schaefer200")

Cortical and subcortical parcellations can be combined by joining their names with a "+" (e.g. "Schaefer200+TianS1"), or by passing a tuple/list of two names (e.g. ("Schaefer200", "TianS1")). NiSpace resolves the combination automatically.

Note

All parcellations are available in all four NiSpace spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, and fsLR (subcortical atlases: MNI152NLin2009cAsym and MNI152NLin6Asym only).

Note

Linked items point to files or folders in the NiSpace data repository.

Would you like to use the brain plots shown below in your publication? You can! They were generated with nispace.plotting.brainplot() and can be fetched via the API with nispace.datasets.fetch_plot(). You are allowed to modify them further, but please attribute NiSpace as the source.

NameLevelAliases
AALCorticalCortex—
AALSubcorticalSubcortex—
AsegSubcortex—
BrainnetomeCorticalCortexBNC
BrainnetomeSubcorticalSubcortexBNS
DesikanKillianyCortexDesikan
DesikanKillianyTourvilleCortexDKT
DestrieuxCortex—
GlasserCortexHCP, MMP
HarvardOxfordCorticalCortexHOC
HarvardOxfordSubcorticalSubcortexHOS
Schaefer1000Parcels17NetworksCortex—
Schaefer1000Parcels7NetworksCortexSchaefer1000
Schaefer100Parcels17NetworksCortex—
Schaefer100Parcels7NetworksCortexSchaefer100
Schaefer200Parcels17NetworksCortex—
Schaefer200Parcels7NetworksCortexSchaefer200
Schaefer400Parcels17NetworksCortex—
Schaefer400Parcels7NetworksCortexSchaefer400
TianS1SubcortexMelbourneS1
TianS2SubcortexMelbourneS2
TianS3SubcortexMelbourneS3
TianS4SubcortexMelbourneS4
Yan100CortexYan100Parcels17Networks
Yan1000CortexYan1000Parcels17Networks
Yan200CortexYan200Parcels17Networks
Yan400CortexYan400Parcels17Networks

Note

Not all parcellations have precomputed distance matrices or spin matrices. Run nispace.nulls.get_distance_matrix() to compute a distance matrix for any parcellation.

AALCortical

AAL2 cortical parcels

AALCortical overview

Level: Cortex
Symmetric: Yes
License: GNU GPL
Reference: Rolls et al., 2015, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: AALCortical

AALSubcortical

AAL2 subcortical parcels, excluding cerebellum

AALSubcortical overview

Level: Subcortex
Symmetric: Yes
License: GNU GPL
Reference: Rolls et al., 2015, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Files: AALSubcortical

Aseg

FreeSurfer 'Aseg' subcortical parcels

Aseg overview

Level: Subcortex
Symmetric: Yes
License: Freesurfer custom: attribution
Reference: Fischl et al., 2002, Neuron
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Files: Aseg

BrainnetomeCortical

Brainnetome Cortical

BrainnetomeCortical overview

Level: Cortex
Symmetric: Yes
License: Brainnetome custom: non-commercial, attribution, share alike
Reference: Fan et al., 2016, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: BNC
Files: BrainnetomeCortical

BrainnetomeSubcortical

Brainnetome Subcortical

BrainnetomeSubcortical overview

Level: Subcortex
Symmetric: Yes
License: Brainnetome custom: non-commercial, attribution, share alike
Reference: Fan et al., 2016, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: BNS
Files: BrainnetomeSubcortical

DesikanKilliany

Desikan-Killiany (DK40)

DesikanKilliany overview

Level: Cortex
Symmetric: Yes
License: Freesurfer license: attribution
Reference: Desikan et al., 2006, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Desikan
Files: DesikanKilliany

DesikanKillianyTourville

Desikan-Killiany-Tourville (DKT)

DesikanKillianyTourville overview

Level: Cortex
Symmetric: Yes
License: Freesurfer license: attribution
Reference: Klein & Tourville, 2012, Front Neurosci
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: DKT
Files: DesikanKillianyTourville

Destrieux

Destrieux (a2009s)

Destrieux overview

Level: Cortex
Symmetric: Yes
License: Freesurfer custom: attribution
Reference: Destrieux et al., 2010, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: Destrieux

Glasser

HCP multimodal parcellation (Glasser atlas)

Glasser overview

Level: Cortex
Symmetric: Yes
License: CC BY 4.0
Reference: Glasser et al., 2016, Nature
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: HCP, MMP
Files: Glasser

HarvardOxfordCortical

Harvard-Oxford Cortical

HarvardOxfordCortical overview

Level: Cortex
Symmetric: Yes
License: FSL custom: attribution
Reference: Makris et al., 2006, Schizophr Res
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: HOC
Files: HarvardOxfordCortical

HarvardOxfordSubcortical

Harvard-Oxford Subcortical

HarvardOxfordSubcortical overview

Level: Subcortex
Symmetric: Yes
License: FSL custom: attribution
Reference: Frazier et al., 2005, Biol Psychiatry
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: HOS
Files: HarvardOxfordSubcortical

Schaefer1000Parcels17Networks

Schaefer 1000 (17 Yeo networks)

Schaefer1000Parcels17Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: Schaefer1000Parcels17Networks

Schaefer1000Parcels7Networks

Schaefer 1000 (7 Yeo networks)

Schaefer1000Parcels7Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Schaefer1000
Files: Schaefer1000Parcels7Networks

Schaefer100Parcels17Networks

Schaefer 100 (17 Yeo networks)

Schaefer100Parcels17Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: Schaefer100Parcels17Networks

Schaefer100Parcels7Networks

Schaefer 100 (7 Yeo networks)

Schaefer100Parcels7Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Schaefer100
Files: Schaefer100Parcels7Networks

Schaefer200Parcels17Networks

Schaefer 200 (17 Yeo networks)

Schaefer200Parcels17Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: Schaefer200Parcels17Networks

Schaefer200Parcels7Networks

Schaefer 200 (7 Yeo networks)

Schaefer200Parcels7Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Schaefer200
Files: Schaefer200Parcels7Networks

Schaefer400Parcels17Networks

Schaefer 400 (17 Yeo networks)

Schaefer400Parcels17Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Files: Schaefer400Parcels17Networks

Schaefer400Parcels7Networks

Schaefer 400 (7 Yeo networks)

Schaefer400Parcels7Networks overview

Level: Cortex
Symmetric: No
License: MIT
Reference: Schaefer et al., 2018, Cereb Cortex
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Schaefer400
Files: Schaefer400Parcels7Networks

TianS1

Melbourne Subcortex S1

TianS1 overview

Level: Subcortex
Symmetric: Yes
License: MIT
Reference: Tian et al., 2020, Nat Neurosci
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: MelbourneS1
Files: TianS1

TianS2

Melbourne Subcortex S2

TianS2 overview

Level: Subcortex
Symmetric: Yes
License: MIT
Reference: Tian et al., 2020, Nat Neurosci
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: MelbourneS2
Files: TianS2

TianS3

Melbourne Subcortex S3

TianS3 overview

Level: Subcortex
Symmetric: Yes
License: MIT
Reference: Tian et al., 2020, Nat Neurosci
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: MelbourneS3
Files: TianS3

TianS4

Melbourne Subcortex S4

TianS4 overview

Level: Subcortex
Symmetric: Yes
License: MIT
Reference: Tian et al., 2020, Nat Neurosci
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym
Aliases: MelbourneS4
Files: TianS4

Yan100

Yan 100 (17 Kong networks)

Yan100 overview

Level: Cortex
Symmetric: Yes
License: MIT
Reference: Yan et al., 2023, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Yan100Parcels17Networks
Files: Yan100

Yan1000

Yan 1000 (17 Kong networks)

Yan1000 overview

Level: Cortex
Symmetric: Yes
License: MIT
Reference: Yan et al., 2023, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Yan1000Parcels17Networks
Files: Yan1000

Yan200

Yan 200 (17 Kong networks)

Yan200 overview

Level: Cortex
Symmetric: Yes
License: MIT
Reference: Yan et al., 2023, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Yan200Parcels17Networks
Files: Yan200

Yan400

Yan 400 (17 Kong networks)

Yan400 overview

Level: Cortex
Symmetric: Yes
License: MIT
Reference: Yan et al., 2023, NeuroImage
Available spaces: MNI152NLin2009cAsym, MNI152NLin6Asym, fsLR, fsaverage
Aliases: Yan400Parcels17Networks
Files: Yan400