Parcellations

NiSpace ships with the following built-in parcellations. Fetch them via nispace.datasets.fetch_parcellation():

from nispace.datasets import fetch_parcellation
parc = fetch_parcellation("Schaefer200")

Cortical and subcortical parcellations can be combined by concatenating their names (e.g. "Schaefer200TianS1"). NiSpace resolves the combination automatically.

Note

Linked items point to files or folders in the NiSpace data repository.

Name	Level	Parcels	Available spaces	Aliases
Schaefer100Parcels7Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	Schaefer100
Schaefer100Parcels17Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Schaefer200Parcels7Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	Schaefer200
Schaefer200Parcels17Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Schaefer400Parcels7Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	Schaefer400
Schaefer400Parcels17Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Schaefer1000Parcels7Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	Schaefer1000
Schaefer1000Parcels17Networks	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
TianS1	Subcortex	16	MNI152NLin2009cAsym, MNI152NLin6Asym	MelbourneS1
TianS2	Subcortex	32	MNI152NLin2009cAsym, MNI152NLin6Asym	MelbourneS2
TianS3	Subcortex	50	MNI152NLin2009cAsym, MNI152NLin6Asym	MelbourneS3
TianS4	Subcortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym	MelbourneS4
Glasser	Cortex	360	fsaverage, fsLR, MNI152NLin2009cAsym, MNI152NLin6Asym	HCP, MMP
DesikanKilliany	Cortex	68	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	Desikan
DesikanKillianyTourville	Cortex	84	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	DKT
Destrieux	Cortex	148	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Aseg	Subcortex	51	MNI152NLin2009cAsym, MNI152NLin6Asym	—
HarvardOxfordCortical	Cortex	48	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	HOC
HarvardOxfordSubcortical	Subcortex	21	MNI152NLin2009cAsym, MNI152NLin6Asym	HOS
BrainnetomeCortical	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	BNC
BrainnetomeSubcortical	Subcortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym	BNS
AALCortical	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
AALSubcortical	Subcortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym	—
Yan100	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Yan200	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Yan400	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—
Yan1000	Cortex	—	MNI152NLin2009cAsym, MNI152NLin6Asym, fsaverage, fsLR	—

Note

Not all parcellations have precomputed distance matrices or spin matrices. Run nispace.nulls.get_distance_matrix() to compute a distance matrix for any parcellation.