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NiSpace - version 0.0.1
Contents:
Installation
Introduction
What is “spatial colocalization”?
An intro to NiSpace
Workflows
Fetching datasets
XSEA: X-Set Enrichment Analysis (cf: ABAnnotate)
Examples
Exploring neural cell types in ASD
Validating neurotransmitter colocalization in drug challenge CBF data
Exploring the neurobiological correlates of ENIGMA cortical thickness maps
FreeSurfer cortical thickness colocalizations in subjects with fragile X syndrome
Citation
Reference API
nispace.api.NiSpace
nispace.datasets.fetch_template
nispace.datasets.fetch_parcellation
nispace.datasets.fetch_reference
nispace.datasets.fetch_metadata
nispace.datasets.fetch_example
nispace.workflows.simple_colocalization
nispace.workflows.group_comparison
nispace.workflows.simple_xsea
nispace.stats.coloc.rank_array
nispace.stats.coloc.corr
nispace.stats.coloc.partialcorr
nispace.stats.coloc.mlr
nispace.stats.coloc.r2
nispace.stats.coloc.beta
nispace.stats.coloc.dominance
nispace.stats.coloc.pls
nispace.stats.coloc.pcr
nispace.stats.coloc.elasticnet
nispace.stats.coloc.lasso
nispace.stats.coloc.ridge
nispace.stats.effectsize.cohen
nispace.stats.effectsize.cohen_nan
nispace.stats.effectsize.cohen_paired
nispace.stats.effectsize.cohen_paired_nan
nispace.stats.effectsize.hedges
nispace.stats.effectsize.hedges_nan
nispace.stats.effectsize.hedges_paired
nispace.stats.effectsize.zscore
nispace.stats.effectsize.zscore_nan
nispace.stats.effectsize.prc
nispace.stats.misc.np_any_axis1
nispace.stats.misc.residuals
nispace.stats.misc.residuals_nan
nispace.stats.misc.rho_to_z
nispace.stats.misc.zscore_df
nispace.stats.misc.permute_groups
nispace.stats.misc.null_to_p
nispace.stats.misc.mc_correction
nispace.io.parcellate_data
nispace.io.read_json
nispace.io.write_json
nispace.io.load_img
nispace.io.load_labels
nispace.io.load_distmat
nispace.parcellate.Parcellater
nispace.nulls.generate_null_maps
nispace.nulls.nulls_moran
nispace.nulls.nulls_burt2020
nispace.nulls.nulls_burt2018
nispace.nulls.get_distance_matrix
nispace.nulls.find_surf_parc_centroids
nispace.plotting.catplot
nispace.plotting.nullplot
nispace.plotting.heatmap
nispace.plotting.move_legend_fig_to_ax
nispace.plotting.colors_from_values
nispace.plotting.hide_empty_axes
nispace.plotting.linewidth_from_data_units
nispace.utils.utils.set_log
nispace.utils.utils.nan_detector
nispace.utils.utils.remove_nan
nispace.utils.utils.fill_nan
nispace.utils.utils.print_arg_pairs
nispace.utils.utils.get_column_names
nispace.utils.utils.lower
nispace.utils.utils.get_background_value
nispace.utils.utils.parc_vect_to_vol
nispace.utils.utils.relabel_gifti_parc
.rst
.pdf
nispace.utils.utils.lower
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